Tuesday, June 29, 2010

Solved : Lock table is out of available locker entries - Yum install, yum upgrade

Recently faced a issue while installing a package using yum
[root@back ~]# yum install mod-security
rpmdb: Lock table is out of available locker entries
rpmdb: Unknown locker ID: 3077
error: db4 error(22) from db->close: Invalid argument
error: cannot open Packages index using db3 - Cannot allocate memory (12)
error: cannot open Packages database in /var/lib/rpm
Traceback (most recent call last):
File "/usr/bin/yum", line 29, in ?
yummain.main(sys.argv[1:])
File "/usr/share/yum-cli/yummain.py", line 85, in main
base.getOptionsConfig(args)
File "/usr/share/yum-cli/cli.py", line 163, in getOptionsConfig
disabled_plugins=self.optparser._splitArg(opts.disableplugins))
File "/usr/lib/python2.4/site-packages/yum/__init__.py", line 164, in _getConfig
self._conf = config.readMainConfig(startupconf)
File "/usr/lib/python2.4/site-packages/yum/config.py", line 685, in readMainConfig
yumvars['releasever'] = _getsysver(startupconf.installroot, startupconf.distroverpkg)
File "/usr/lib/python2.4/site-packages/yum/config.py", line 752, in _getsysver
idx = ts.dbMatch('provides', distroverpkg)
TypeError: rpmdb open failed

Googling and Searching on this topic got it resolved
[root@back ~]# ll /var/lib/rpm/
Basenames __db.000 __db.002 Dirnames Group Name Providename Pubkeys Requireversion Sigmd5
Conflictname __db.001 __db.003 Filemd5s Installtid Packages Provideversion Requirename Sha1header Triggername
[root@back ~]# ll /var/lib/rpm/
Basenames __db.000 __db.002 Dirnames Group Name Providename Pubkeys Requireversion Sigmd5
Conflictname __db.001 __db.003 Filemd5s Installtid Packages Provideversion Requirename Sha1header Triggername

[root@back ~]# rm /var/lib/rpm/_db.00*
rm: cannot lstat `/var/lib/rpm/_db.00*': No such file or directory
[root@back ~]# rm /var/lib/rpm/__db.00*
rm: remove regular empty file `/var/lib/rpm/__db.000'? y
rm: remove regular file `/var/lib/rpm/__db.001'? y
rm: remove regular file `/var/lib/rpm/__db.002'? y
rm: remove regular file `/var/lib/rpm/__db.003'? y

[root@back ~]# rpm --rebuilddb

[root@back ~]# yum install mod-security

utterramblings 100% |=========================| 951 B 00:00

primary.xml.gz 100% |=========================| 22 kB 00:00

utterrambl: ################################################## 64/64

extras 100% |=========================| 2.1 kB 00:00

primary.sqlite.bz2 100% |=========================| 184 kB 00:38

updates 100% |=========================| 1.9 kB 00:00

primary.sqlite.bz2 100% |=========================| 254 kB 00:28

base 100% |=========================| 2.1 kB 00:00

primary.sqlite.bz2 100% |=========================| 1.6 MB 00:17

c5-testing 100% |=========================| 1.9 kB 00:00

addons 100% |=========================| 951 B 00:00

Setting up Install Process

Parsing package install arguments

No package mod-security available.

Nothing to do

[root@back ~]# yum install mod_security

Setting up Install Process

Parsing package install arguments

Resolving Dependencies

--> Running transaction check

---> Package mod_security.i386 0:2.5.9-1.jason.1 set to be updated

--> Finished Dependency Resolution
Dependencies Resolved
=============================================================================

Package Arch Version Repository Size

=============================================================================

Installing:

mod_security i386 2.5.9-1.jason.1 utterramblings 1.2 M
Transaction Summary

=============================================================================

Install 1 Package(s)

Update 0 Package(s)

Remove 0 Package(s)
Total download size: 1.2 M

Is this ok [y/N]: y

Downloading Packages:

(1/1): mod_security-2.5.9 100% |=========================| 1.2 MB 00:03

warning: rpmts_HdrFromFdno: Header V3 DSA signature: NOKEY, key ID 0d4306ef

Importing GPG key 0x0D4306EF "Jason Litka (http://www.jasonlitka.com) " from http://www.jasonlitka.com/media/RPM-GPG-KEY-jlitka

Is this ok [y/N]: y

Running rpm_check_debug

Running Transaction Test

Finished Transaction Test

Transaction Test Succeeded

Running Transaction

Installing: mod_security ######################### [1/1]
Installed: mod_security.i386 0:2.5.9-1.jason.1

Complete!

This problem occurs when rpm accesses the Berkeley database files, it makes temporary locker entries within the tables while it searches for data. If you control-c your rpm processes often, this issue will occur much sooner because the locks are never cleared.

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